PCHAS_120730 protein (Plasmodium chabaudi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Size

small nodes:
protein of unknown 3D structure

large nodes:
some 3D structure is known or predicted

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

PCHAS_120730

26S proteasome regulatory subunit 4, putative (447 aa)

Predicted Functional Partners:

PCHAS_135640

0.999

PCHAS_050230

0.999

PCHAS_122350

0.999

PCHAS_081420

0.999

PCHAS_030580

0.999

PCHAS_133430

0.999

PCHAS_051460

0.999

PCHAS_041120

0.999

PCHAS_092710

0.999

PCHAS_104040

0.999

Your Current Organism:

Plasmodium chabaudi

NCBI taxonomy Id: 5825
Other names: P. chabaudi, Plasmodium chabaudi

Export your current network:

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... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
PCHAS_030580	PCHAS_041120	proteasome 26S regulatory subunit	26S proteasome regulatory subunit S14	0.999
PCHAS_030580	PCHAS_050230	proteasome 26S regulatory subunit	hypothetical protein	0.999
PCHAS_030580	PCHAS_051460	proteasome 26S regulatory subunit	hypothetical protein	0.999
PCHAS_030580	PCHAS_081420	proteasome 26S regulatory subunit	hypothetical protein	0.999
PCHAS_030580	PCHAS_092710	proteasome 26S regulatory subunit	hypothetical protein	0.999
PCHAS_030580	PCHAS_104040	proteasome 26S regulatory subunit	proteosome subunit	0.999
PCHAS_030580	PCHAS_120730	proteasome 26S regulatory subunit	26S proteasome regulatory subunit 4, putative	0.999
PCHAS_030580	PCHAS_122350	proteasome 26S regulatory subunit	hypothetical protein	0.999
PCHAS_030580	PCHAS_133430	proteasome 26S regulatory subunit	hypothetical protein	0.999
PCHAS_030580	PCHAS_135640	proteasome 26S regulatory subunit	hypothetical protein	0.999
PCHAS_041120	PCHAS_030580	26S proteasome regulatory subunit S14	proteasome 26S regulatory subunit	0.999
PCHAS_041120	PCHAS_050230	26S proteasome regulatory subunit S14	hypothetical protein	0.999
PCHAS_041120	PCHAS_051460	26S proteasome regulatory subunit S14	hypothetical protein	0.999
PCHAS_041120	PCHAS_081420	26S proteasome regulatory subunit S14	hypothetical protein	0.999
PCHAS_041120	PCHAS_092710	26S proteasome regulatory subunit S14	hypothetical protein	0.999
PCHAS_041120	PCHAS_104040	26S proteasome regulatory subunit S14	proteosome subunit	0.999
PCHAS_041120	PCHAS_120730	26S proteasome regulatory subunit S14	26S proteasome regulatory subunit 4, putative	0.999
PCHAS_041120	PCHAS_122350	26S proteasome regulatory subunit S14	hypothetical protein	0.999
PCHAS_041120	PCHAS_133430	26S proteasome regulatory subunit S14	hypothetical protein	0.999
PCHAS_041120	PCHAS_135640	26S proteasome regulatory subunit S14	hypothetical protein	0.999

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Experiments

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Textmining

Fusion

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