Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
|
Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
|||||
 | PCHAS_141630 | Protein kinase, putative (314 aa) | ||||||||||||
Predicted Functional Partners:
| ||||||||||||||
 | PCHAS_010470 | ST kinase (353 aa) |
 |
|
|
0.970 | ||||||||
 | PCHAS_113260 | Ser/Thr protein kinase, putative (3521 aa) |
|
|
0.956 | |||||||||
 | PCHAS_144000 | hypothetical protein (407 aa) |
|
|
0.953 | |||||||||
 | PCHAS_102610 | hypothetical protein (3139 aa) |
|
|
0.953 | |||||||||
 | PCHAS_111290 | hypothetical protein (881 aa) |
|
|
|
0.943 | ||||||||
 | PCHAS_130470 | hypothetical protein (736 aa) |
|
|
0.892 | |||||||||
 | PCHAS_101540 | hypothetical protein (320 aa) |
|
|
0.879 | |||||||||
 | PCHAS_020880 | hypothetical protein (1094 aa) |
|
|
0.865 | |||||||||
 | PCHAS_123090 | hypothetical protein (727 aa) |
|
|
0.847 | |||||||||
 | PCHAS_101040 | helicase (2936 aa) |
|
|
|
0.833 | ||||||||
Your Current Organism:
Plasmodium chabaudi
NCBI taxonomy Id: 5825
Other names: P. chabaudi, Plasmodium chabaudi
Other names: P. chabaudi, Plasmodium chabaudi
Share
