Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PCHAS_141730 | hypothetical protein (632 aa) | ||||||||||||
Predicted Functional Partners:
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 | PCHAS_091130 | protein kinase (688 aa) |
 |
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0.911 | |||||||||
 | PCHAS_071710 | u5 snrnp-specific protein (323 aa) |
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0.908 | ||||||||
 | PCHAS_090690 | hypothetical protein (1147 aa) |
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0.891 | |||||||||
 | PCHAS_100400 | hypothetical protein (2938 aa) |
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0.891 | |||||||||
 | PCHAS_123390 | Snrnp protein, putative (939 aa) |
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0.793 | |||||||||
 | PCHAS_080360 | helicase (1010 aa) |
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0.793 | |||||||||
 | PCHAS_144840 | Dim1 protein (142 aa) |
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0.750 | ||||||||||
 | PCHAS_040770 | hypothetical protein (499 aa) |
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0.724 | ||||||||
 | PCHAS_082590 | hypothetical protein (566 aa) |
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0.664 | |||||||||
 | PCHAS_093660 | u6 snRNA-associated sm-like protein (95 aa) |
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0.654 | |||||||||
Your Current Organism:
Plasmodium chabaudi
NCBI taxonomy Id: 5825
Other names: P. chabaudi, Plasmodium chabaudi
Other names: P. chabaudi, Plasmodium chabaudi
