Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PCHAS_144360 | hypothetical protein (384 aa) | ||||||||||||
Predicted Functional Partners:
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 | PCHAS_111810 | hypothetical protein (815 aa) |
 |
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0.985 | |||||||||
 | PCHAS_103070 | Putative uncharacterized protein (1044 aa) |
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0.985 | |||||||||
 | PCHAS_121080 | DNA repair protein RAD23 (362 aa) |
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0.928 | |||||||||
 | PCHAS_093390 | hypothetical protein (1222 aa) |
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0.824 | |||||||||
 | PCHAS_080520 | hypothetical protein (914 aa) |
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0.798 | ||||||||
 | PCHAS_114350 | hypothetical protein (311 aa) |
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0.680 | |||||||||
 | PCHAS_132740 | annotation not available (228 aa) |
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0.666 | ||||||||||
 | PCHAS_131880 | sortilin (887 aa) |
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0.655 | ||||||||||
 | PCHAS_091340 | hypothetical protein (419 aa) |
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0.632 | |||||||||
 | PCHAS_123400 | Putative uncharacterized protein (1044 aa) |
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0.594 | |||||||||
Your Current Organism:
Plasmodium chabaudi
NCBI taxonomy Id: 5825
Other names: P. chabaudi, Plasmodium chabaudi
Other names: P. chabaudi, Plasmodium chabaudi
