Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | ROM7 | Rhomboid protease ROM7 (340 aa) | ||||||||||||
Predicted Functional Partners:
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 | ROM8 | Rhomboid protease ROM8 (738 aa) |
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0.855 | ||||||||||
 | ROM6 | Rhomboid protease ROM6, putative (569 aa) |
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0.843 | ||||||||||
 | ROM9 | Rhomboid protease ROM9 (488 aa) |
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0.827 | |||||||||
 | ROM1 | Rhomboid-1 (278 aa) |
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0.756 | |||||||||
 | MAL8P1.45 | Putative uncharacterized protein (924 aa) |
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0.745 | |||||||||
 | ROM3 | Rhomboid protease ROM3, putative (267 aa) |
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0.722 | |||||||||
 | ROM4 | Rhomboid protease ROM4 (759 aa) |
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0.715 | |||||||||
 | PTRAMP | Thrombospondin-related apical membrane protein (352 aa) |
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0.638 | ||||||||||
 | PFA_0200w | Sporozoite stage TSP1 domain protein, S21 (163 aa) |
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0.638 | ||||||||||
 | MAL13P1.139 | Tetratricopeptide repeat family protein, putative (141 aa) |
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0.502 | ||||||||||
Your Current Organism:
Plasmodium falciparum
NCBI taxonomy Id: 5833
Other names: Laverania, P. (Laverania), P. falciparum, Plasmodium (Laverania), Plasmodium (Laverania) falciparum, Plasmodium falciparum, malaria parasite P. falciparum
Other names: Laverania, P. (Laverania), P. falciparum, Plasmodium (Laverania), Plasmodium (Laverania) falciparum, Plasmodium falciparum, malaria parasite P. falciparum
