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STRINGSTRING
PFF0285c PFF0285c PF10_0080 PF10_0080 PFA0390w PFA0390w PF14_0278 PF14_0278 FEN-1 FEN-1 PFI0910w PFI0910w PF10_0362 PF10_0362 PF08_0126 PF08_0126 PFD0935c PFD0935c Rad51 Rad51 MAL8P1.76 MAL8P1.76
"PFD0935c" - Putative uncharacterized protein in Plasmodium falciparum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small protein node
small nodes:
protein of unknown 3D structure
large protein node
large nodes:
some 3D structure is known or predicted
Node Color
colored protein node
colored nodes:
query proteins and first shell of interactors
non-colored protein node
white nodes:
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
database edge
from curated databases
experiment edge
experimentally determined
Predicted Interactions
neighborhood edge
gene neighborhood
fusion edge
gene fusions
cooccurrence edge
gene co-occurrence
Others
textmining edge
textmining
coexpression edge
co-expression
homology edge
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFD0935cPutative uncharacterized protein (346 aa)    
Predicted Functional Partners:
MAL8P1.76
Meiotic recombination protein dmc1-like protein (347 aa)
      score_image score_image   score_image   0.997
Rad51
Recombinase Rad51 (350 aa)
      score_image score_image   score_image   0.996
PFI0910w
DNA helicase, putative (728 aa)
      score_image score_image   score_image   0.975
PF14_0278
ATP-dependent DNA helicase, putative (1440 aa)
      score_image score_image   score_image   0.972
PF10_0362
DNA polymerase (2240 aa)
      score_image score_image   score_image   0.953
FEN-1
Flap endonuclease 1; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a [...] (672 aa)
score_image     score_image score_image   score_image   0.943
PFA0390w
annotation not available (1252 aa)
score_image     score_image score_image   score_image   0.938
PF10_0080
Endonuclease, putative (388 aa)
score_image     score_image score_image   score_image   0.927
PF08_0126
DNA repair protein rad54, putative (1239 aa)
score_image     score_image score_image   score_image   0.918
PFF0285c
Probable DNA repair protein RAD50; Essential component of the MRN complex, a complex that possesses single-stranded DNA endonuclease and 3’ to 5’ exonuclease activities, and plays a central role in double-strand break (DSB) repair, chromosome morphogenesis, DNA repair and meiosis. In the complex, it mediates the ATP-binding and is probably required to bind DNA ends and hold them in close proximity (By similarity) (2236 aa)
score_image     score_image score_image   score_image   0.915
Your Current Organism:
Plasmodium falciparum
NCBI taxonomy Id: 5833
Other names: Laverania, P. (Laverania), P. falciparum, Plasmodium (Laverania), Plasmodium (Laverania) falciparum, Plasmodium falciparum, malaria parasite P. falciparum
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