Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
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Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PKH_060390 | Autophagy protein 8I, putative (124 aa) | ||||||||||||
Predicted Functional Partners:
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 | PKH_092370 | ThiF family protein, putative (1152 aa) |
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0.999 | |||||||||
 | PKH_070290 | Autophagy-related protein 3 (318 aa) |
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0.998 | ||||||||
 | PKH_083720 | N-ethylmaleimide-sensitive fusion protein,putative (783 aa) |
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0.978 | ||||||||
 | PKH_140170 | Synaptobrevin-like protein, putative (208 aa) |
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0.931 | |||||||||
 | PKH_010920 | Cell division cycle ATPase, putative (1132 aa) |
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0.839 | |||||||||
 | PKH_073050 | Aminopeptidase, putative (534 aa) |
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0.794 | ||||||||
 | PKH_101740 | Phosphatidylinositol 3-kinase, putative (1791 aa) |
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0.790 | |||||||||
 | PKH_070040 | Rab7 GTPase, putative (206 aa) |
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0.776 | ||||||||
 | PKH_133490 | ATPase, putative (1133 aa) |
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0.718 | |||||||||
 | PKH_113000 | Cell division cycle protein 48 homologue,putative (822 aa) |
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0.718 | |||||||||
Your Current Organism:
Plasmodium knowlesi
NCBI taxonomy Id: 5850
Other names: P. knowlesi, Plasmodium knowlesi
Other names: P. knowlesi, Plasmodium knowlesi
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