Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
|
Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
|||||
 | PKH_091340 | Putative uncharacterized protein (844 aa) | ||||||||||||
Predicted Functional Partners:
| ||||||||||||||
 | PKH_051420 | Putative uncharacterized protein (1158 aa) |
 |
|
0.669 | |||||||||
 | PKH_125430 | Putative uncharacterized protein (2143 aa) |
|
|
0.630 | |||||||||
 | PKH_131400 | NAD(P)H-dependent glutamate synthase, putative (3019 aa) |
|
0.454 | ||||||||||
Your Current Organism:
Plasmodium knowlesi
NCBI taxonomy Id: 5850
Other names: P. knowlesi, Plasmodium knowlesi
Other names: P. knowlesi, Plasmodium knowlesi
Share
