Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
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Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PKH_124560 | Ubiquitin carboxyl-terminal hydrolase, putative (228 aa) | ||||||||||||
Predicted Functional Partners:
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 | PKH_141210 | Ubiquitin-like protein nedd8 homologue,putative (76 aa) |
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0.973 | ||||||||
 | PKH_131070 | Ubiquitin, putative (609 aa) |
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0.943 | |||||||||
 | PKH_091450 | Ubiquitin c-terminal hydrolase, family 1,putative (451 aa) |
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0.843 | ||||||||
 | PKH_070180 | Ubiquitin carboxyl-terminal hydrolase, putative (1557 aa) |
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0.817 | |||||||||
 | PKH_031160 | Ubiquitin specific protease, putative (383 aa) |
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0.817 | |||||||||
 | PKH_144260 | Ubiquitin-activating enzyme e1, putative (1152 aa) |
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0.789 | |||||||||
 | PKH_121970 | ThiF family protein, putative (1603 aa) |
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0.789 | |||||||||
 | PKH_051760 | Ubiquitin carboxyl-terminal hydrolase a,putative (892 aa) |
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0.766 | |||||||||
 | PKH_021090 | Ubiquitin carboxyl-terminal hydrolase (2966 aa) |
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0.762 | |||||||||
 | PKH_130600 | Putative uncharacterized protein (2526 aa) |
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0.734 | ||||||||||
Your Current Organism:
Plasmodium knowlesi
NCBI taxonomy Id: 5850
Other names: P. knowlesi, Plasmodium knowlesi
Other names: P. knowlesi, Plasmodium knowlesi
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