PVX_001005 protein (Plasmodium vivax)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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protein of unknown 3D structure

large nodes:
some 3D structure is known or predicted

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Score

PVX_001005

protease (762 aa)

Predicted Functional Partners:

sub1

0.821

CPSII

0.745

PVX_100730

0.640

PVX_090960

0.637

PVX_114820

0.444

PVX_088125

0.411

Your Current Organism:

Plasmodium vivax

NCBI taxonomy Id: 5855
Other names: P. vivax, Plasmodium vivax, malaria parasite P. vivax

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPSII	PVX_001005	PVX_122240	PVX_001005	Carbamoyl phosphate synthetase II	protease	0.745
CPSII	PVX_100730	PVX_122240	PVX_100730	Carbamoyl phosphate synthetase II	serine hydroxymethyltransferase	0.855
PVX_001005	CPSII	PVX_001005	PVX_122240	protease	Carbamoyl phosphate synthetase II	0.745
PVX_001005	PVX_088125	PVX_001005	PVX_088125	protease	Aspartyl protease	0.411
PVX_001005	PVX_090960	PVX_001005	PVX_090960	protease	hypothetical protein	0.637
PVX_001005	PVX_100730	PVX_001005	PVX_100730	protease	serine hydroxymethyltransferase	0.640
PVX_001005	PVX_114820	PVX_001005	PVX_114820	protease	Protein kinase domain containing protein	0.444
PVX_001005	sub1	PVX_001005	PVX_097935	protease	Subtilisin-like 1 serine protease	0.821
PVX_088125	PVX_001005	PVX_088125	PVX_001005	Aspartyl protease	protease	0.411
PVX_090960	PVX_001005	PVX_090960	PVX_001005	hypothetical protein	protease	0.637
PVX_100730	CPSII	PVX_100730	PVX_122240	serine hydroxymethyltransferase	Carbamoyl phosphate synthetase II	0.855
PVX_100730	PVX_001005	PVX_100730	PVX_001005	serine hydroxymethyltransferase	protease	0.640
PVX_114820	PVX_001005	PVX_114820	PVX_001005	Protein kinase domain containing protein	protease	0.444
sub1	PVX_001005	PVX_097935	PVX_001005	Subtilisin-like 1 serine protease	protease	0.821

Databases

Neighborhood

Textmining

Cooccurrence

Coexpression

Fusion

Experiments