Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PVX_082945 | Ser/Thr protein phosphatase family protein (566 aa) | ||||||||||||
Predicted Functional Partners:
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 | PVX_098910 | K12619 5’-3’ exoribonuclease 2 [EC-3.1.13.-] (1353 aa) |
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0.725 | |||||||||
 | PVX_090990 | hypothetical protein (587 aa) |
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0.725 | |||||||||
 | PVX_093595 | cyclophilin (578 aa) |
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0.682 | ||||||||||
 | PVX_122275 | hypothetical protein (1420 aa) |
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0.635 | |||||||||
 | PVX_091600 | U2 snRNP auxiliary factor, small subunit (316 aa) |
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0.621 | ||||||||||
 | PVX_099300 | ATP-dependant RNA helicase (840 aa) |
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0.566 | ||||||||||
Your Current Organism:
Plasmodium vivax
NCBI taxonomy Id: 5855
Other names: P. vivax, Plasmodium vivax, malaria parasite P. vivax
Other names: P. vivax, Plasmodium vivax, malaria parasite P. vivax
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