Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
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Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PVX_089655 | ubiquitin carboxyl-terminal hydrolase a (889 aa) | ||||||||||||
Predicted Functional Partners:
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 | PVX_084620 | polyubiquitin 5 (381 aa) |
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0.963 | |||||||||
 | PVX_098675 | ubiquitin carboxyl-terminal hydrolase (1593 aa) |
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0.885 | |||||||||
 | PVX_001075 | ubiquitin-specific protease (383 aa) |
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0.885 | |||||||||
 | PVX_099465 | ubiquitin conjugating enzyme E2 (163 aa) |
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0.795 | |||||||||
 | PVX_082575 | isoleucyl-tRNA synthetase (1206 aa) |
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0.788 | ||||||||
 | PVX_079880 | ubiquitin carboxyl-terminal hydrolase (590 aa) |
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0.765 | |||||||||
 | PVX_081630 | ubiquitin carboxyl-terminal hydrolase family 2 (3000 aa) |
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0.764 | ||||||||
 | PVX_080415 | ubiquitin carboxyl-terminal hydrolase 2 (1346 aa) |
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0.758 | |||||||||
 | PVX_117435 | ubiquitin carboxyl-terminal hydrolase (228 aa) |
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0.757 | |||||||||
 | PVX_085715 | hypothetical protein (1210 aa) |
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0.709 | ||||||||||
Your Current Organism:
Plasmodium vivax
NCBI taxonomy Id: 5855
Other names: P. vivax, Plasmodium vivax, malaria parasite P. vivax
Other names: P. vivax, Plasmodium vivax, malaria parasite P. vivax
