Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
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Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PVX_092055 | GPI8p transamidase (470 aa) | ||||||||||||
Predicted Functional Partners:
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 | PVX_091725 | hypothetical protein (516 aa) |
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0.999 | ||||||||
 | PVX_082475 | hypothetical protein (440 aa) |
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0.891 | |||||||
 | PVX_123395 | hypothetical protein (1212 aa) |
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0.834 | ||||||||
 | PVX_092685 | dolichyl-phosphate b-D-mannosyltransferase (240 aa) |
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0.804 | |||||||||
 | PVX_114070 | N-acetylglucosamine transferase (661 aa) |
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0.800 | |||||||||
 | PVX_084575 | K05284 phosphatidylinositol glycan, class M [EC-2.4.1.-] (409 aa) |
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0.794 | |||||||||
 | PVX_082980 | K05286 phosphatidylinositol glycan, class B [EC-2.4.1.-] (625 aa) |
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0.790 | |||||||||
 | PVX_113900 | hypothetical protein (651 aa) |
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0.748 | ||||||||||
 | PVX_101257 | hypothetical protein (500 aa) |
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0.743 | |||||||||
 | PVX_111105 | phosphatidyl inositol glycan, class A (425 aa) |
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0.734 | ||||||||||
Your Current Organism:
Plasmodium vivax
NCBI taxonomy Id: 5855
Other names: P. vivax, Plasmodium vivax, malaria parasite P. vivax
Other names: P. vivax, Plasmodium vivax, malaria parasite P. vivax
