PVX_114725 protein (Plasmodium vivax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Size

small nodes:
protein of unknown 3D structure

large nodes:
some 3D structure is known or predicted

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PVX_114725

Metacaspase 1 (593 aa)

Predicted Functional Partners:

PVX_110870

0.746

PVX_088170

0.705

PVX_122830

0.701

PVX_100650

0.693

PVX_115075

0.672

PVX_001860

0.667

PVX_101315

0.646

PVX_100935

0.641

PVX_096305

0.639

PVX_088125

0.630

Your Current Organism:

Plasmodium vivax

NCBI taxonomy Id: 5855
Other names: P. vivax, Plasmodium vivax, malaria parasite P. vivax

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
PVX_001860	PVX_114725	microtubule-associated protein 1 light chain 3	Metacaspase 1	0.667
PVX_088125	PVX_088170	Aspartyl protease	proteasome subunit alpha type 6	0.632
PVX_088125	PVX_100650	Aspartyl protease	Ulp1 protease family, C-terminal catalytic domain containing protein	0.630
PVX_088125	PVX_114725	Aspartyl protease	Metacaspase 1	0.630
PVX_088125	PVX_122830	Aspartyl protease	Signal peptidase	0.630
PVX_088170	PVX_088125	proteasome subunit alpha type 6	Aspartyl protease	0.632
PVX_088170	PVX_100650	proteasome subunit alpha type 6	Ulp1 protease family, C-terminal catalytic domain containing protein	0.706
PVX_088170	PVX_100935	proteasome subunit alpha type 6	cell division protein FtsH	0.657
PVX_088170	PVX_114725	proteasome subunit alpha type 6	Metacaspase 1	0.705
PVX_088170	PVX_115075	proteasome subunit alpha type 6	hypothetical protein	0.630
PVX_088170	PVX_122830	proteasome subunit alpha type 6	Signal peptidase	0.712
PVX_096305	PVX_100935	ferrodoxin reductase	cell division protein FtsH	0.434
PVX_096305	PVX_114725	ferrodoxin reductase	Metacaspase 1	0.639
PVX_100650	PVX_088125	Ulp1 protease family, C-terminal catalytic domain containing protein	Aspartyl protease	0.630
PVX_100650	PVX_088170	Ulp1 protease family, C-terminal catalytic domain containing protein	proteasome subunit alpha type 6	0.706
PVX_100650	PVX_100935	Ulp1 protease family, C-terminal catalytic domain containing protein	cell division protein FtsH	0.642
PVX_100650	PVX_114725	Ulp1 protease family, C-terminal catalytic domain containing protein	Metacaspase 1	0.693
PVX_100650	PVX_115075	Ulp1 protease family, C-terminal catalytic domain containing protein	hypothetical protein	0.601
PVX_100650	PVX_122830	Ulp1 protease family, C-terminal catalytic domain containing protein	Signal peptidase	0.690
PVX_100935	PVX_088170	cell division protein FtsH	proteasome subunit alpha type 6	0.657

page 1 of 3

Experiments

Cooccurrence

Textmining

Neighborhood

Coexpression

Fusion

Databases

© STRING Consortium 2017

Credits

Access

Info

About