Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | Chro.40035 | ubiquitin-conjugating enzyme (151 aa) | ||||||||||||
Predicted Functional Partners:
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 | Chro.10298 | hypothetical protein (96 aa) |
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0.985 | ||||||||
 | Chro.50123 | ubiquitin B (229 aa) |
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0.985 | ||||||||
 | Chro.40260 | ubiquitin-activating enzyme e1 (1062 aa) |
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0.978 | |||||||||
 | Chro.70260 | ubiquitin / ribosomal protein CEP52 (128 aa) |
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0.935 | ||||||||
 | Chro.10052 | ubiquitin conjugating enzyme E2 (95 aa) |
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0.893 | ||||||||||
 | Chro.80300 | hypothetical protein (627 aa) |
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0.843 | |||||||||
 | Chro.20160 | SUMO-1 activating enzyme subunit 2 (637 aa) |
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0.793 | ||||||||
 | Chro.80443 | hypothetical protein (336 aa) |
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0.783 | ||||||||||
 | Chro.20330 | hypothetical protein (347 aa) |
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0.771 | |||||||||
 | Chro.40141 | hypothetical protein (137 aa) |
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0.771 | |||||||||
Your Current Organism:
Cryptosporidium hominis
NCBI taxonomy Id: 353151
Other names: C. hominis TU502, Cryptosporidium hominis, Cryptosporidium hominis TU502, Cryptosporidium hominis strain TU502
Other names: C. hominis TU502, Cryptosporidium hominis, Cryptosporidium hominis TU502, Cryptosporidium hominis strain TU502
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