Chro.40151 protein (Cryptosporidium hominis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Size

small nodes:
protein of unknown 3D structure

large nodes:
some 3D structure is known or predicted

Node Color

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

Chro.40151

hypothetical protein (801 aa)

Predicted Functional Partners:

Chro.20179

0.784

Chro.70583

0.717

Chro.60505

0.717

Chro.50123

0.547

Your Current Organism:

Cryptosporidium hominis

NCBI taxonomy Id: 353151
Other names: C. hominis TU502, Cryptosporidium hominis, Cryptosporidium hominis TU502, Cryptosporidium hominis strain TU502

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TSV: tab separated values - can be opened in Excel

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Chro.20179	Chro.40151	XP_667462.1	XP_666099.1	dolichyl-di-phosphooligosaccharide-protein glycotransferase (oligosaccharyltransferase)-related	hypothetical protein	0.784
Chro.20179	Chro.50123	XP_667462.1	XP_667472.1	dolichyl-di-phosphooligosaccharide-protein glycotransferase (oligosaccharyltransferase)-related	ubiquitin B	0.930
Chro.40151	Chro.20179	XP_666099.1	XP_667462.1	hypothetical protein	dolichyl-di-phosphooligosaccharide-protein glycotransferase (oligosaccharyltransferase)-related	0.784
Chro.40151	Chro.50123	XP_666099.1	XP_667472.1	hypothetical protein	ubiquitin B	0.547
Chro.40151	Chro.60505	XP_666099.1	XP_665152.1	hypothetical protein	aminoacyl-tRNA synthetase	0.717
Chro.40151	Chro.70583	XP_666099.1	XP_666634.1	hypothetical protein	RNA helicase-like protein; Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine (By similarity)	0.717
Chro.50123	Chro.20179	XP_667472.1	XP_667462.1	ubiquitin B	dolichyl-di-phosphooligosaccharide-protein glycotransferase (oligosaccharyltransferase)-related	0.930
Chro.50123	Chro.40151	XP_667472.1	XP_666099.1	ubiquitin B	hypothetical protein	0.547
Chro.50123	Chro.60505	XP_667472.1	XP_665152.1	ubiquitin B	aminoacyl-tRNA synthetase	0.904
Chro.60505	Chro.40151	XP_665152.1	XP_666099.1	aminoacyl-tRNA synthetase	hypothetical protein	0.717
Chro.60505	Chro.50123	XP_665152.1	XP_667472.1	aminoacyl-tRNA synthetase	ubiquitin B	0.904
Chro.60505	Chro.70583	XP_665152.1	XP_666634.1	aminoacyl-tRNA synthetase	RNA helicase-like protein; Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine (By similarity)	0.706
Chro.70583	Chro.40151	XP_666634.1	XP_666099.1	RNA helicase-like protein; Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine (By similarity)	hypothetical protein	0.717
Chro.70583	Chro.60505	XP_666634.1	XP_665152.1	RNA helicase-like protein; Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine (By similarity)	aminoacyl-tRNA synthetase	0.706

Experiments

Cooccurrence

Databases

Neighborhood

Textmining

Fusion

Coexpression