Full Link:
  • Version:
  • 10.0 (archived version)
STRINGSTRING
EHI_184530 EHI_184530 EHI_014080 EHI_014080 EHI_033720 EHI_033720 EHI_199610 EHI_199610 rna_EHI_083410-1 rna_EHI_083410-1 rna_EHI_083270-1 rna_EHI_083270-1 EHI_182990 EHI_182990 EHI_147700 EHI_147700 rna_EHI_182990-1 rna_EHI_182990-1 EHI_083270 EHI_083270 rna_EHI_156660-1 rna_EHI_156660-1
"EHI_199610" - Ubiquitin carboxyl-terminal hydrolase family protein in Entamoeba histolytica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small protein node
small nodes:
protein of unknown 3D structure
large protein node
large nodes:
some 3D structure is known or predicted
Node Color
colored protein node
colored nodes:
query proteins and first shell of interactors
non-colored protein node
white nodes:
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
database edge
from curated databases
experiment edge
experimentally determined
Predicted Interactions
neighborhood edge
gene neighborhood
fusion edge
gene fusions
cooccurrence edge
gene co-occurrence
Others
textmining edge
textmining
coexpression edge
co-expression
homology edge
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHI_199610Ubiquitin carboxyl-terminal hydrolase family protein (584 aa)    
Predicted Functional Partners:
EHI_182990
Histone H2B ; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (By similarity) (133 aa)
        score_image   score_image   0.931
rna_EHI_182990-1
Histone H2B (133 aa)
        score_image   score_image   0.931
EHI_184530
Helicase, putative (953 aa)
        score_image       0.922
EHI_033720
DEAD/DEAH box helicase, putative (757 aa)
        score_image       0.922
EHI_014080
DEAD/DEAH box helicase, putative (664 aa)
        score_image       0.922
EHI_083270
Ubiquitin, putative (97 aa)
        score_image   score_image   0.919
rna_EHI_156660-1
Ubiquitin; Ubiquitin, putative (77 aa)
        score_image   score_image   0.919
rna_EHI_083410-1
Ubiquitin; Ubiquitin, putative (77 aa)
        score_image   score_image   0.919
rna_EHI_083270-1
Ubiquitin; Ubiquitin, putative (77 aa)
        score_image   score_image   0.919
EHI_147700
Ubiquitin-conjugating enzyme family protein (164 aa)
        score_image   score_image   0.865
Your Current Organism:
Entamoeba histolytica
NCBI taxonomy Id: 5759
Other names: E. histolytica, Entamoeba histolytica