Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
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Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | cgd4_1530 | conserved protein (509 aa) | ||||||||||||
Predicted Functional Partners:
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 | cgd6_5080 | GroEL-like chaperone (ATpase) (536 aa) |
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0.640 | ||||||||||
 | LDH1 | lactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase (337 aa) |
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0.555 | |||||||||
 | MalDH1 | malate dehydrogenase (328 aa) |
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0.555 | |||||||||
 | cgd8_1720 | acetaldehyde reductase plus alcohol dehydrogenase (AdhE) of possible bacterial origin (867 aa) |
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0.541 | |||||||||
 | cgd7_2710 | ataxin2 related nudix domain protein (RNA processing phosphatase/ATpase domain) (651 aa) |
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0.434 | |||||||||
 | cgd3_1950 | BIS(5’-nucleosyl)-tetraphosphatase (diadenosine tetraphosphatase) (95 aa) |
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0.434 | |||||||||
Your Current Organism:
Cryptosporidium parvum
NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II
Other names: C. parvum Iowa II, Cryptosporidium parvum, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II
