Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
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Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | cgd5_2350 | SnRNP assembly defective 1 like ubiquitin C-terminal hydrolase with a UBP finger at the N-terminus (498 aa) | ||||||||||||
Predicted Functional Partners:
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 | cgd8_5180 | hypothetical protein (454 aa) |
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0.923 | |||||||||
 | cgd4_3140 | WD repeat protein (343 aa) |
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0.915 | ||||||||
 | cgd5_920 | Pre-mRNA splicing factor Pro1/Prp6. HAT repeat protein (923 aa) |
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0.893 | |||||||||
 | cgd3_2890 | Prp8. JAB/PAD domain (2379 aa) |
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0.893 | |||||||||
 | cgd3_3690 | U5 snRNP 100 kD protein (529 aa) |
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0.887 | ||||||||||
 | cgd8_2880 | hypothetical protein (158 aa) |
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0.798 | |||||||||
 | 1MB.730 | PRP19 non-snRNP sliceosome component required for DNA repair (576 aa) |
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0.776 | ||||||||
 | 1MB.699 | Prp9p-like splicing factor 3a subunit 3 snRNP. C-terminal C2H2 (493 aa) |
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0.728 | |||||||||
 | cgd1_420 | 20S proteasome beta subunit D2 (PBD2); The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity) (203 aa) |
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0.655 | |||||||||
 | 1MB.672 | UBP5 like deubiquitinating enzyme with a UB hydrolase domain and two UBA domains at the C-terminus (921 aa) |
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0.642 | ||||||||||
Your Current Organism:
Cryptosporidium parvum
NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II
Other names: C. parvum Iowa II, Cryptosporidium parvum, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II
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