cgd5_3960 protein (Cryptosporidium parvum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Size

small nodes:
protein of unknown 3D structure

large nodes:
some 3D structure is known or predicted

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cgd5_3960

secreted protein of the alpha beta hydrolase superfamily (366 aa)

Predicted Functional Partners:

FAS1

0.799

PKS

0.799

ACL1

0.742

cgd5_3200

0.742

cgd4_3400

0.742

cgd7_630

0.455

cgd1_2680

0.455

Your Current Organism:

Cryptosporidium parvum

NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACL1	FAS1	XP_626649.1	XP_626786.1	acyl-CoA synthetase	type I fatty acid synthase	0.879
ACL1	PKS	XP_626649.1	XP_625875.1	acyl-CoA synthetase	polyketide synthase	0.700
ACL1	cgd5_3960	XP_626649.1	XP_625560.1	acyl-CoA synthetase	secreted protein of the alpha beta hydrolase superfamily	0.742
FAS1	ACL1	XP_626786.1	XP_626649.1	type I fatty acid synthase	acyl-CoA synthetase	0.879
FAS1	PKS	XP_626786.1	XP_625875.1	type I fatty acid synthase	polyketide synthase	0.894
FAS1	cgd4_3400	XP_626786.1	XP_625917.1	type I fatty acid synthase	long chain fatty acyl CoA synthetase having a signal peptide	0.879
FAS1	cgd5_3200	XP_626786.1	XP_626248.1	type I fatty acid synthase	acyl-CoA synthetase	0.879
FAS1	cgd5_3960	XP_626786.1	XP_625560.1	type I fatty acid synthase	secreted protein of the alpha beta hydrolase superfamily	0.799
PKS	ACL1	XP_625875.1	XP_626649.1	polyketide synthase	acyl-CoA synthetase	0.700
PKS	FAS1	XP_625875.1	XP_626786.1	polyketide synthase	type I fatty acid synthase	0.894
PKS	cgd4_3400	XP_625875.1	XP_625917.1	polyketide synthase	long chain fatty acyl CoA synthetase having a signal peptide	0.879
PKS	cgd5_3200	XP_625875.1	XP_626248.1	polyketide synthase	acyl-CoA synthetase	0.879
PKS	cgd5_3960	XP_625875.1	XP_625560.1	polyketide synthase	secreted protein of the alpha beta hydrolase superfamily	0.799
cgd1_2680	cgd5_3960	XP_628092.1	XP_625560.1	HUSSY-3 like methyltransferase	secreted protein of the alpha beta hydrolase superfamily	0.455
cgd4_3400	FAS1	XP_625917.1	XP_626786.1	long chain fatty acyl CoA synthetase having a signal peptide	type I fatty acid synthase	0.879
cgd4_3400	PKS	XP_625917.1	XP_625875.1	long chain fatty acyl CoA synthetase having a signal peptide	polyketide synthase	0.879
cgd4_3400	cgd5_3960	XP_625917.1	XP_625560.1	long chain fatty acyl CoA synthetase having a signal peptide	secreted protein of the alpha beta hydrolase superfamily	0.742
cgd5_3200	FAS1	XP_626248.1	XP_626786.1	acyl-CoA synthetase	type I fatty acid synthase	0.879
cgd5_3200	PKS	XP_626248.1	XP_625875.1	acyl-CoA synthetase	polyketide synthase	0.879
cgd5_3200	cgd5_3960	XP_626248.1	XP_625560.1	acyl-CoA synthetase	secreted protein of the alpha beta hydrolase superfamily	0.742

page 1 of 2

Experiments

Neighborhood

Databases

Cooccurrence

Textmining

Fusion

Coexpression