splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes: protein of unknown 3D structure
large nodes: some 3D structure is known or predicted
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
EPG5
ectopic P-granules autophagy protein 5 homolog (C. elegans); Involved in autophagy. May play a role in a late step of autophagy, such as clearance of autophagosomal cargo (2579 aa)
UBC
ubiquitin C (685 aa)
Your Current Organism:
Homo sapiens
NCBI taxonomy Id: 9606 Other names: H. sapiens, Homo, Homo sapiens, human, man
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
node1
node2
node1 accession
node2 accession
node1 annotation
node2 annotation
score
EPG5
UBC
ENSP00000282041
ENSP00000344818
ectopic P-granules autophagy protein 5 homolog (C. elegans); Involved in autophagy. May play a role in a late step of autophagy, such as clearance of autophagosomal cargo
ubiquitin C
0.483
UBC
EPG5
ENSP00000344818
ENSP00000282041
ubiquitin C
ectopic P-granules autophagy protein 5 homolog (C. elegans); Involved in autophagy. May play a role in a late step of autophagy, such as clearance of autophagosomal cargo
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Neighborhood
Groups of genes that are frequently observed in each other's genomic neighborhood.
Textmining
Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
Fusion
Genes that are sometimes fused into single open reading frames.
Coexpression
Proteins whose genes are observed to be correlated in expression, across a large number of experiments.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network Stats
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Functional enrichments in your network
Enrichment analysis is still ongoing, please wait ...
Statistical background
For the above enrichment analysis, the following statistical background is assumed: