Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | LENG1 | leukocyte receptor cluster (LRC) member 1 (264 aa) | ||||||||||||
Predicted Functional Partners:
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 | FZR1 | fizzy/cell division cycle 20 related 1 (Drosophila) (496 aa) |
 |
0.619 | ||||||||||
 | CNOT3 | CCR4-NOT transcription complex, subunit 3 (753 aa) |
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0.499 | ||||||||||
 | TFPT | TCF3 (E2A) fusion partner (in childhood Leukemia) (253 aa) |
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0.483 | ||||||||||
 | RPL14 | ribosomal protein L14 (215 aa) |
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0.461 | ||||||||||
 | PRPF31 | PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae) (499 aa) |
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0.407 | ||||||||||
Your Current Organism:
Homo sapiens
NCBI taxonomy Id: 9606
Other names: H. sapiens, Homo, Homo sapiens, human, man
Other names: H. sapiens, Homo, Homo sapiens, human, man
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