LIMCH1 protein (Homo sapiens) - STRING network view

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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protein of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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Score

LIMCH1

LIM and calponin homology domains 1 (1083 aa)

Predicted Functional Partners:

HUWE1

0.644

ARL9

0.632

TAPT1

0.614

ANKRD50

0.609

TMEM33

0.605

ADAD1

0.595

SPATA5

0.567

GABPA

0.548

TRMT61A

0.543

NPM1

0.539

Your Current Organism:

Homo sapiens

NCBI taxonomy Id: 9606
Other names: H. sapiens, Homo, Homo sapiens, human, man

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADAD1	ANKRD50	ENSP00000296513	ENSP00000425658	adenosine deaminase domain containing 1 (testis-specific); Plays a role in spermatogenesis. Binds to RNA but not to DNA (By similarity)	ankyrin repeat domain 50	0.616
ADAD1	ARL9	ENSP00000296513	ENSP00000353210	adenosine deaminase domain containing 1 (testis-specific); Plays a role in spermatogenesis. Binds to RNA but not to DNA (By similarity)	ADP-ribosylation factor-like 9	0.684
ADAD1	LIMCH1	ENSP00000296513	ENSP00000316891	adenosine deaminase domain containing 1 (testis-specific); Plays a role in spermatogenesis. Binds to RNA but not to DNA (By similarity)	LIM and calponin homology domains 1	0.595
ADAD1	SPATA5	ENSP00000296513	ENSP00000274008	adenosine deaminase domain containing 1 (testis-specific); Plays a role in spermatogenesis. Binds to RNA but not to DNA (By similarity)	spermatogenesis associated 5; May be involved in morphological and functional mitochondrial transformations during spermatogenesis (By similarity)	0.620
ADAD1	TAPT1	ENSP00000296513	ENSP00000385347	adenosine deaminase domain containing 1 (testis-specific); Plays a role in spermatogenesis. Binds to RNA but not to DNA (By similarity)	transmembrane anterior posterior transformation 1; May act as a downstream effector of HOXC8 possibly by transducing or transmitting extracellular information required for axial skeletal patterning during development (By similarity). In case of infection, may act as a fusion receptor for cytomegalovirus (HCMV) strain AD169	0.655
ADAD1	TMEM33	ENSP00000296513	ENSP00000422473	adenosine deaminase domain containing 1 (testis-specific); Plays a role in spermatogenesis. Binds to RNA but not to DNA (By similarity)	transmembrane protein 33	0.622
ANKRD50	ADAD1	ENSP00000425658	ENSP00000296513	ankyrin repeat domain 50	adenosine deaminase domain containing 1 (testis-specific); Plays a role in spermatogenesis. Binds to RNA but not to DNA (By similarity)	0.616
ANKRD50	ARL9	ENSP00000425658	ENSP00000353210	ankyrin repeat domain 50	ADP-ribosylation factor-like 9	0.686
ANKRD50	LIMCH1	ENSP00000425658	ENSP00000316891	ankyrin repeat domain 50	LIM and calponin homology domains 1	0.609
ANKRD50	SPATA5	ENSP00000425658	ENSP00000274008	ankyrin repeat domain 50	spermatogenesis associated 5; May be involved in morphological and functional mitochondrial transformations during spermatogenesis (By similarity)	0.641
ANKRD50	TAPT1	ENSP00000425658	ENSP00000385347	ankyrin repeat domain 50	transmembrane anterior posterior transformation 1; May act as a downstream effector of HOXC8 possibly by transducing or transmitting extracellular information required for axial skeletal patterning during development (By similarity). In case of infection, may act as a fusion receptor for cytomegalovirus (HCMV) strain AD169	0.639
ANKRD50	TMEM33	ENSP00000425658	ENSP00000422473	ankyrin repeat domain 50	transmembrane protein 33	0.626
ARL9	ADAD1	ENSP00000353210	ENSP00000296513	ADP-ribosylation factor-like 9	adenosine deaminase domain containing 1 (testis-specific); Plays a role in spermatogenesis. Binds to RNA but not to DNA (By similarity)	0.684
ARL9	ANKRD50	ENSP00000353210	ENSP00000425658	ADP-ribosylation factor-like 9	ankyrin repeat domain 50	0.686
ARL9	LIMCH1	ENSP00000353210	ENSP00000316891	ADP-ribosylation factor-like 9	LIM and calponin homology domains 1	0.632
ARL9	SPATA5	ENSP00000353210	ENSP00000274008	ADP-ribosylation factor-like 9	spermatogenesis associated 5; May be involved in morphological and functional mitochondrial transformations during spermatogenesis (By similarity)	0.699
ARL9	TAPT1	ENSP00000353210	ENSP00000385347	ADP-ribosylation factor-like 9	transmembrane anterior posterior transformation 1; May act as a downstream effector of HOXC8 possibly by transducing or transmitting extracellular information required for axial skeletal patterning during development (By similarity). In case of infection, may act as a fusion receptor for cytomegalovirus (HCMV) strain AD169	0.715
ARL9	TMEM33	ENSP00000353210	ENSP00000422473	ADP-ribosylation factor-like 9	transmembrane protein 33	0.688
GABPA	LIMCH1	ENSP00000346886	ENSP00000316891	GA binding protein transcription factor, alpha subunit 60kDa; Transcription factor capable of interacting with purine rich repeats (GA repeats). Necessary for the expression of the Adenovirus E4 gene	LIM and calponin homology domains 1	0.548
HUWE1	LIMCH1	ENSP00000262854	ENSP00000316891	HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase	LIM and calponin homology domains 1	0.644

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