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STRINGSTRING
LUM LUM COL3A1 COL3A1 COL5A2 COL5A2 COL2A1 COL2A1 COL1A1 COL1A1 COL11A1 COL11A1 COL9A2 COL9A2 COL24A1 COL24A1 COL9A1 COL9A1 COL16A1 COL16A1 COL17A1 COL17A1
"COL11A1" - collagen, type XI, alpha 1 in Homo sapiens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small protein node
small nodes:
protein of unknown 3D structure
large protein node
large nodes:
some 3D structure is known or predicted
Node Color
colored protein node
colored nodes:
query proteins and first shell of interactors
non-colored protein node
white nodes:
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
database edge
from curated databases
experiment edge
experimentally determined
Predicted Interactions
neighborhood edge
gene neighborhood
fusion edge
gene fusions
cooccurrence edge
gene co-occurrence
Others
textmining edge
textmining
coexpression edge
co-expression
homology edge
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL11A1collagen, type XI, alpha 1 (1806 aa)    
Predicted Functional Partners:
COL2A1
collagen, type II, alpha 1 (1487 aa)
          score_image score_image score_image 0.928
COL16A1
collagen, type XVI, alpha 1; Involved in mediating cell attachment and inducing integrin-mediated cellular reactions, such as cell spreading and alterations in cell morphology (1604 aa)
          score_image score_image   0.925
COL5A2
collagen, type V, alpha 2 (1499 aa)
          score_image score_image score_image 0.924
COL24A1
collagen, type XXIV, alpha 1; May participate in regulating type I collagen fibrillogenesis at specific anatomical locations during fetal development (1714 aa)
          score_image score_image score_image 0.924
COL9A1
collagen, type IX, alpha 1 (921 aa)
          score_image score_image score_image 0.923
LUM
lumican (338 aa)
          score_image score_image   0.922
COL9A2
collagen, type IX, alpha 2; Structural component of hyaline cartilage and vitreous of the eye (689 aa)
          score_image score_image score_image 0.921
COL17A1
collagen, type XVII, alpha 1; May play a role in the integrity of hemidesmosome and the attachment of basal keratinocytes to the underlying basement membrane (1497 aa)
          score_image score_image   0.921
COL3A1
collagen, type III, alpha 1 (1466 aa)
          score_image score_image score_image 0.920
COL1A1
collagen, type I, alpha 1 (1464 aa)
          score_image score_image score_image 0.920
Your Current Organism:
Homo sapiens
NCBI taxonomy Id: 9606
Other names: H. sapiens, Homo, Homo sapiens, human, man
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