RBM18 protein (Homo sapiens) - STRING network view

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Size

small nodes:
protein of unknown 3D structure

large nodes:
some 3D structure is known or predicted

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RBM18

RNA binding motif protein 18 (190 aa)

Predicted Functional Partners:

MCM3AP

0.536

PTRH2

0.496

TIMM50

0.491

MCCC2

0.435

SART1

0.418

IMMT

0.400

Your Current Organism:

Homo sapiens

NCBI taxonomy Id: 9606
Other names: H. sapiens, Homo, Homo sapiens, human, man

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IMMT	MCCC2	ENSP00000387262	ENSP00000343657	inner membrane protein, mitochondrial	methylcrotonoyl-CoA carboxylase 2 (beta)	0.447
IMMT	MCM3AP	ENSP00000387262	ENSP00000291688	inner membrane protein, mitochondrial	minichromosome maintenance complex component 3 associated protein; May be involved in the nuclear localization pathway of MCM3	0.426
IMMT	RBM18	ENSP00000387262	ENSP00000409315	inner membrane protein, mitochondrial	RNA binding motif protein 18	0.400
MCCC2	IMMT	ENSP00000343657	ENSP00000387262	methylcrotonoyl-CoA carboxylase 2 (beta)	inner membrane protein, mitochondrial	0.447
MCCC2	RBM18	ENSP00000343657	ENSP00000409315	methylcrotonoyl-CoA carboxylase 2 (beta)	RNA binding motif protein 18	0.435
MCM3AP	IMMT	ENSP00000291688	ENSP00000387262	minichromosome maintenance complex component 3 associated protein; May be involved in the nuclear localization pathway of MCM3	inner membrane protein, mitochondrial	0.426
MCM3AP	PTRH2	ENSP00000291688	ENSP00000376758	minichromosome maintenance complex component 3 associated protein; May be involved in the nuclear localization pathway of MCM3	peptidyl-tRNA hydrolase 2; The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis (By similarity)	0.450
MCM3AP	RBM18	ENSP00000291688	ENSP00000409315	minichromosome maintenance complex component 3 associated protein; May be involved in the nuclear localization pathway of MCM3	RNA binding motif protein 18	0.536
MCM3AP	TIMM50	ENSP00000291688	ENSP00000318115	minichromosome maintenance complex component 3 associated protein; May be involved in the nuclear localization pathway of MCM3	translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae); Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Has some phosphatase activity in vitro; however such activity may not be relevant in vivo. Isoform 2 may participate in the release of snRNPs and SMN from the Cajal body	0.437
PTRH2	MCM3AP	ENSP00000376758	ENSP00000291688	peptidyl-tRNA hydrolase 2; The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis (By similarity)	minichromosome maintenance complex component 3 associated protein; May be involved in the nuclear localization pathway of MCM3	0.450
PTRH2	RBM18	ENSP00000376758	ENSP00000409315	peptidyl-tRNA hydrolase 2; The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis (By similarity)	RNA binding motif protein 18	0.496
RBM18	IMMT	ENSP00000409315	ENSP00000387262	RNA binding motif protein 18	inner membrane protein, mitochondrial	0.400
RBM18	MCCC2	ENSP00000409315	ENSP00000343657	RNA binding motif protein 18	methylcrotonoyl-CoA carboxylase 2 (beta)	0.435
RBM18	MCM3AP	ENSP00000409315	ENSP00000291688	RNA binding motif protein 18	minichromosome maintenance complex component 3 associated protein; May be involved in the nuclear localization pathway of MCM3	0.536
RBM18	PTRH2	ENSP00000409315	ENSP00000376758	RNA binding motif protein 18	peptidyl-tRNA hydrolase 2; The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis (By similarity)	0.496
RBM18	SART1	ENSP00000409315	ENSP00000310448	RNA binding motif protein 18	squamous cell carcinoma antigen recognized by T cells; Plays a role in mRNA splicing as a component of the U4/U6-U5 tri-snRNP, one of the building blocks of the spliceosome. May also bind to DNA	0.418
RBM18	TIMM50	ENSP00000409315	ENSP00000318115	RNA binding motif protein 18	translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae); Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Has some phosphatase activity in vitro; however such activity may not be relevant in vivo. Isoform 2 may participate in the release of snRNPs and SMN from the Cajal body	0.491
SART1	RBM18	ENSP00000310448	ENSP00000409315	squamous cell carcinoma antigen recognized by T cells; Plays a role in mRNA splicing as a component of the U4/U6-U5 tri-snRNP, one of the building blocks of the spliceosome. May also bind to DNA	RNA binding motif protein 18	0.418
TIMM50	MCM3AP	ENSP00000318115	ENSP00000291688	translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae); Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Has some phosphatase activity in vitro; however such activity may not be relevant in vivo. Isoform 2 may participate in the release of snRNPs and SMN from the Cajal body	minichromosome maintenance complex component 3 associated protein; May be involved in the nuclear localization pathway of MCM3	0.437
TIMM50	RBM18	ENSP00000318115	ENSP00000409315	translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae); Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Has some phosphatase activity in vitro; however such activity may not be relevant in vivo. Isoform 2 may participate in the release of snRNPs and SMN from the Cajal body	RNA binding motif protein 18	0.491

Textmining

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Coexpression

© STRING Consortium 2017

Credits

Access

Info

About