Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
|
Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
|||||
 | RGAG1 | retrotransposon gag domain containing 1 (1388 aa) | ||||||||||||
Predicted Functional Partners:
| ||||||||||||||
 | FAM127A | family with sequence similarity 127, member A (113 aa) |
 |
0.539 | ||||||||||
 | ZCCHC16 | zinc finger, CCHC domain containing 16 (310 aa) |
|
0.502 | ||||||||||
 | LDOC1L | leucine zipper, down-regulated in cancer 1-like (239 aa) |
|
0.502 | ||||||||||
 | ZNF793 | zinc finger protein 793; May be involved in transcriptional regulation (406 aa) |
|
0.412 | ||||||||||
Your Current Organism:
Homo sapiens
NCBI taxonomy Id: 9606
Other names: H. sapiens, Homo, Homo sapiens, human, man
Other names: H. sapiens, Homo, Homo sapiens, human, man
Share
