Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_0821 | Psyr_4142 | Psyr_0821 | Psyr_4142 | Phosphoenolpyruvate-protein phosphotransferase; TC 4.A.2.1.1; Belongs to the PEP-utilizing enzyme family. | KpsF/GutQ. | 0.414 |
Psyr_0821 | Psyr_4147 | Psyr_0821 | Psyr_4147 | Phosphoenolpyruvate-protein phosphotransferase; TC 4.A.2.1.1; Belongs to the PEP-utilizing enzyme family. | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.605 |
Psyr_0821 | Psyr_4148 | Psyr_0821 | Psyr_4148 | Phosphoenolpyruvate-protein phosphotransferase; TC 4.A.2.1.1; Belongs to the PEP-utilizing enzyme family. | Sigma 54 modulation protein / SSU ribosomal protein S30P. | 0.618 |
Psyr_0821 | Psyr_4149 | Psyr_0821 | Psyr_4149 | Phosphoenolpyruvate-protein phosphotransferase; TC 4.A.2.1.1; Belongs to the PEP-utilizing enzyme family. | PTS IIA-like nitrogen-regulatory protein PtsN. | 0.817 |
Psyr_0821 | Psyr_4150 | Psyr_0821 | Psyr_4150 | Phosphoenolpyruvate-protein phosphotransferase; TC 4.A.2.1.1; Belongs to the PEP-utilizing enzyme family. | Uncharacterized P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities. | 0.582 |
Psyr_0821 | Psyr_4151 | Psyr_0821 | Psyr_4151 | Phosphoenolpyruvate-protein phosphotransferase; TC 4.A.2.1.1; Belongs to the PEP-utilizing enzyme family. | Phosphocarrier HPr protein. | 0.999 |
Psyr_0821 | glmM | Psyr_0821 | Psyr_4185 | Phosphoenolpyruvate-protein phosphotransferase; TC 4.A.2.1.1; Belongs to the PEP-utilizing enzyme family. | Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. | 0.530 |
Psyr_0821 | lptA | Psyr_0821 | Psyr_4145 | Phosphoenolpyruvate-protein phosphotransferase; TC 4.A.2.1.1; Belongs to the PEP-utilizing enzyme family. | OstA-like protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | 0.549 |
Psyr_4142 | Psyr_0821 | Psyr_4142 | Psyr_0821 | KpsF/GutQ. | Phosphoenolpyruvate-protein phosphotransferase; TC 4.A.2.1.1; Belongs to the PEP-utilizing enzyme family. | 0.414 |
Psyr_4142 | Psyr_4147 | Psyr_4142 | Psyr_4147 | KpsF/GutQ. | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.562 |
Psyr_4142 | Psyr_4148 | Psyr_4142 | Psyr_4148 | KpsF/GutQ. | Sigma 54 modulation protein / SSU ribosomal protein S30P. | 0.521 |
Psyr_4142 | Psyr_4149 | Psyr_4142 | Psyr_4149 | KpsF/GutQ. | PTS IIA-like nitrogen-regulatory protein PtsN. | 0.532 |
Psyr_4142 | Psyr_4150 | Psyr_4142 | Psyr_4150 | KpsF/GutQ. | Uncharacterized P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities. | 0.484 |
Psyr_4142 | Psyr_4151 | Psyr_4142 | Psyr_4151 | KpsF/GutQ. | Phosphocarrier HPr protein. | 0.468 |
Psyr_4142 | glmM | Psyr_4142 | Psyr_4185 | KpsF/GutQ. | Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. | 0.412 |
Psyr_4142 | lptA | Psyr_4142 | Psyr_4145 | KpsF/GutQ. | OstA-like protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | 0.762 |
Psyr_4147 | Psyr_0821 | Psyr_4147 | Psyr_0821 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Phosphoenolpyruvate-protein phosphotransferase; TC 4.A.2.1.1; Belongs to the PEP-utilizing enzyme family. | 0.605 |
Psyr_4147 | Psyr_4142 | Psyr_4147 | Psyr_4142 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | KpsF/GutQ. | 0.562 |
Psyr_4147 | Psyr_4148 | Psyr_4147 | Psyr_4148 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Sigma 54 modulation protein / SSU ribosomal protein S30P. | 0.749 |
Psyr_4147 | Psyr_4149 | Psyr_4147 | Psyr_4149 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | PTS IIA-like nitrogen-regulatory protein PtsN. | 0.805 |
page 1 of 4