Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APE_0392 | APE_0689.1 | APE_0392 | APE_0689.1 | Malate dehydrogenase; Malic enzyme. | Isocitrate dehydrogenase [NADP]; NADP-IDH. | 0.442 |
APE_0392 | fumC | APE_0392 | APE_1816.1 | Malate dehydrogenase; Malic enzyme. | Fumarate hydratase class II. | 0.962 |
APE_0392 | gltA | APE_0392 | APE_1713 | Malate dehydrogenase; Malic enzyme. | Citrate synthase. | 0.886 |
APE_0392 | mdh | APE_0392 | APE_0672.1 | Malate dehydrogenase; Malic enzyme. | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Can also oxidize tartrate. Can utilize both NAD and NADP. Catalytic efficiency for malate oxidation is 3-fold higher with NADP. Belongs to the LDH/MDH superfamily. | 0.951 |
APE_0392 | pckA | APE_0392 | APE_0033.1 | Malate dehydrogenase; Malic enzyme. | Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family. | 0.612 |
APE_0689.1 | APE_0392 | APE_0689.1 | APE_0392 | Isocitrate dehydrogenase [NADP]; NADP-IDH. | Malate dehydrogenase; Malic enzyme. | 0.442 |
APE_0689.1 | aspC | APE_0689.1 | APE_0674.1 | Isocitrate dehydrogenase [NADP]; NADP-IDH. | Aspartate aminotransferase; Transaminase A. | 0.867 |
APE_0689.1 | aspC-2 | APE_0689.1 | APE_2248.1 | Isocitrate dehydrogenase [NADP]; NADP-IDH. | Aspartate aminotransferase; Transaminase A. | 0.867 |
APE_0689.1 | fumC | APE_0689.1 | APE_1816.1 | Isocitrate dehydrogenase [NADP]; NADP-IDH. | Fumarate hydratase class II. | 0.730 |
APE_0689.1 | gap | APE_0689.1 | APE_0171.1 | Isocitrate dehydrogenase [NADP]; NADP-IDH. | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH. | 0.709 |
APE_0689.1 | gdhA | APE_0689.1 | APE_1386.1 | Isocitrate dehydrogenase [NADP]; NADP-IDH. | NADP-dependent glutamate dehydrogenase; GDH; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.968 |
APE_0689.1 | gltA | APE_0689.1 | APE_1713 | Isocitrate dehydrogenase [NADP]; NADP-IDH. | Citrate synthase. | 0.988 |
APE_0689.1 | mdh | APE_0689.1 | APE_0672.1 | Isocitrate dehydrogenase [NADP]; NADP-IDH. | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Can also oxidize tartrate. Can utilize both NAD and NADP. Catalytic efficiency for malate oxidation is 3-fold higher with NADP. Belongs to the LDH/MDH superfamily. | 0.954 |
APE_0689.1 | sdhB | APE_0689.1 | APE_0946 | Isocitrate dehydrogenase [NADP]; NADP-IDH. | Succinate dehydrogenase subunit B. | 0.887 |
aspC | APE_0689.1 | APE_0674.1 | APE_0689.1 | Aspartate aminotransferase; Transaminase A. | Isocitrate dehydrogenase [NADP]; NADP-IDH. | 0.867 |
aspC | aspC-2 | APE_0674.1 | APE_2248.1 | Aspartate aminotransferase; Transaminase A. | Aspartate aminotransferase; Transaminase A. | 0.914 |
aspC | fumC | APE_0674.1 | APE_1816.1 | Aspartate aminotransferase; Transaminase A. | Fumarate hydratase class II. | 0.845 |
aspC | gdhA | APE_0674.1 | APE_1386.1 | Aspartate aminotransferase; Transaminase A. | NADP-dependent glutamate dehydrogenase; GDH; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.926 |
aspC | gltA | APE_0674.1 | APE_1713 | Aspartate aminotransferase; Transaminase A. | Citrate synthase. | 0.886 |
aspC | mdh | APE_0674.1 | APE_0672.1 | Aspartate aminotransferase; Transaminase A. | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Can also oxidize tartrate. Can utilize both NAD and NADP. Catalytic efficiency for malate oxidation is 3-fold higher with NADP. Belongs to the LDH/MDH superfamily. | 0.967 |
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