STRINGSTRING
Jann_0539 Jann_0539 Jann_0540 Jann_0540 Jann_0541 Jann_0541 Jann_0538 Jann_0538 Jann_0537 Jann_0537 Jann_0223 Jann_0223 Jann_0542 Jann_0542 rne rne Jann_2869 Jann_2869 Jann_0536 Jann_0536 glmM glmM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jann_0539Uncharacterized P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities. (318 aa)    
Predicted Functional Partners:
Jann_0540
PTS system fructose subfamily IIA component.
 
   
 0.901
Jann_0541
HPrNtr.
  
  
 0.895
Jann_0538
Hpr(Ser) kinase/phosphatase.
 
   
 0.853
Jann_0537
Periplasmic sensor signal transduction histidine kinase.
       0.813
Jann_0223
PTS IIA-like nitrogen-regulatory protein PtsN.
  
  
 0.784
Jann_0542
Hypothetical protein.
       0.763
rne
RNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
   
 
 0.688
Jann_2869
Ribonuclease Rne/Rng family.
   
 
 0.688
Jann_0536
Two component transcriptional regulator, winged helix family.
  
    0.681
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
   
 0.665
Your Current Organism:
Jannaschia sp. CCS1
NCBI taxonomy Id: 290400
Other names: J. sp. CCS1
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