rpsT protein (Rickettsia canadensis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

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Score

rpsT

30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (90 aa)

Predicted Functional Partners:

rpmB

0.999

A1E_00480

0.999

rplM

0.999

rpsI-2

0.999

rpsU-2

0.999

rpmH

0.999

rpsO

0.999

rplQ

0.999

rplU

0.999

rpmA

0.999

Your Current Organism:

Rickettsia canadensis

NCBI taxonomy Id: 293613
Other names: R. canadensis str. McKiel, Rickettsia canadensis str. McKiel, Rickettsia canadensis strain McKiel

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1E_00480	rplM	A1E_00480	A1E_01345	COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
A1E_00480	rplQ	A1E_00480	A1E_04245	COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	COG0203 Ribosomal protein L17.	0.996
A1E_00480	rplU	A1E_00480	A1E_04815	COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
A1E_00480	rpmA	A1E_00480	A1E_04820	COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.999
A1E_00480	rpmB	A1E_00480	A1E_00475	COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.999
A1E_00480	rpmH	A1E_00480	A1E_01740	COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	COG0594 RNase P protein component; Belongs to the bacterial ribosomal protein bL34 family.	0.995
A1E_00480	rpsI-2	A1E_00480	A1E_01350	COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.998
A1E_00480	rpsO	A1E_00480	A1E_02920	COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.999
A1E_00480	rpsT	A1E_00480	A1E_04240	COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.999
A1E_00480	rpsU-2	A1E_00480	A1E_01695	COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.997
rplM	A1E_00480	A1E_01345	A1E_00480	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.999
rplM	rplQ	A1E_01345	A1E_04245	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COG0203 Ribosomal protein L17.	0.999
rplM	rplU	A1E_01345	A1E_04815	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rplM	rpmA	A1E_01345	A1E_04820	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplM	rpmB	A1E_01345	A1E_00475	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rplM	rpmH	A1E_01345	A1E_01740	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COG0594 RNase P protein component; Belongs to the bacterial ribosomal protein bL34 family.	0.998
rplM	rpsI-2	A1E_01345	A1E_01350	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplM	rpsO	A1E_01345	A1E_02920	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.999
rplM	rpsT	A1E_01345	A1E_04240	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.999
rplM	rpsU-2	A1E_01345	A1E_01695	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.999