Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CYB_0193 | trpF | CYB_0193 | CYB_0194 | Conserved hypothetical protein TIGR00730; Identified by match to protein family HMM PF03641. | N-(5'phosphoribosyl)anthranilate isomerase; Identified by similarity to SP:Q56320; match to protein family HMM PF00697; Belongs to the TrpF family. | 0.611 |
| CYB_0333 | CYB_2299 | CYB_0333 | CYB_2299 | Identified by match to protein family HMM PF02885. | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | 0.620 |
| CYB_0333 | hisIE | CYB_0333 | CYB_0157 | Identified by match to protein family HMM PF02885. | Histidine biosynthesis bifunctional protein HisIE; Identified by match to protein family HMM PF01502; match to protein family HMM PF01503; In the N-terminal section; belongs to the PRA-CH family. | 0.533 |
| CYB_0333 | trpA | CYB_0333 | CYB_0937 | Identified by match to protein family HMM PF02885. | Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.941 |
| CYB_0333 | trpB | CYB_0333 | CYB_1508 | Identified by match to protein family HMM PF02885. | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.910 |
| CYB_0333 | trpC | CYB_0333 | CYB_2343 | Identified by match to protein family HMM PF02885. | Indole-3-glycerol phosphate synthase; Identified by match to protein family HMM PF00218; Belongs to the TrpC family. | 0.949 |
| CYB_0333 | trpE | CYB_0333 | CYB_0535 | Identified by match to protein family HMM PF02885. | Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.983 |
| CYB_0333 | trpF | CYB_0333 | CYB_0194 | Identified by match to protein family HMM PF02885. | N-(5'phosphoribosyl)anthranilate isomerase; Identified by similarity to SP:Q56320; match to protein family HMM PF00697; Belongs to the TrpF family. | 0.936 |
| CYB_0333 | trpG | CYB_0333 | CYB_2417 | Identified by match to protein family HMM PF02885. | Anthranilate synthase component II; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | 0.914 |
| CYB_2299 | CYB_0333 | CYB_2299 | CYB_0333 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Identified by match to protein family HMM PF02885. | 0.620 |
| CYB_2299 | trpA | CYB_2299 | CYB_0937 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.678 |
| CYB_2299 | trpB | CYB_2299 | CYB_1508 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.522 |
| CYB_2299 | trpC | CYB_2299 | CYB_2343 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Indole-3-glycerol phosphate synthase; Identified by match to protein family HMM PF00218; Belongs to the TrpC family. | 0.724 |
| CYB_2299 | trpD | CYB_2299 | CYB_0050 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.736 |
| CYB_2299 | trpE | CYB_2299 | CYB_0535 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.880 |
| CYB_2299 | trpF | CYB_2299 | CYB_0194 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | N-(5'phosphoribosyl)anthranilate isomerase; Identified by similarity to SP:Q56320; match to protein family HMM PF00697; Belongs to the TrpF family. | 0.670 |
| CYB_2299 | trpG | CYB_2299 | CYB_2417 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Anthranilate synthase component II; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | 0.949 |
| hisIE | CYB_0333 | CYB_0157 | CYB_0333 | Histidine biosynthesis bifunctional protein HisIE; Identified by match to protein family HMM PF01502; match to protein family HMM PF01503; In the N-terminal section; belongs to the PRA-CH family. | Identified by match to protein family HMM PF02885. | 0.533 |
| hisIE | trpA | CYB_0157 | CYB_0937 | Histidine biosynthesis bifunctional protein HisIE; Identified by match to protein family HMM PF01502; match to protein family HMM PF01503; In the N-terminal section; belongs to the PRA-CH family. | Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.678 |
| hisIE | trpB | CYB_0157 | CYB_1508 | Histidine biosynthesis bifunctional protein HisIE; Identified by match to protein family HMM PF01502; match to protein family HMM PF01503; In the N-terminal section; belongs to the PRA-CH family. | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.582 |
page 1 of 5