node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sama_0041 | Sama_0419 | Sama_0041 | Sama_0419 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | KEGG: son:SO0467 DNA helicase II. | 0.454 |
Sama_0041 | ligA | Sama_0041 | Sama_1516 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.824 |
Sama_0041 | polA | Sama_0041 | Sama_0093 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.503 |
Sama_0041 | rep | Sama_0041 | Sama_3266 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | ATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. | 0.454 |
Sama_0041 | topA | Sama_0041 | Sama_1322 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.531 |
Sama_0419 | Sama_0041 | Sama_0419 | Sama_0041 | KEGG: son:SO0467 DNA helicase II. | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.454 |
Sama_0419 | ligA | Sama_0419 | Sama_1516 | KEGG: son:SO0467 DNA helicase II. | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.660 |
Sama_0419 | polA | Sama_0419 | Sama_0093 | KEGG: son:SO0467 DNA helicase II. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.630 |
Sama_0419 | ruvB | Sama_0419 | Sama_1839 | KEGG: son:SO0467 DNA helicase II. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.420 |
Sama_0419 | topA | Sama_0419 | Sama_1322 | KEGG: son:SO0467 DNA helicase II. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.633 |
Sama_1995 | ligA | Sama_1995 | Sama_1516 | KEGG: shm:Shewmr7_2268 ATP dependent DNA ligase. | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.934 |
Sama_1995 | polA | Sama_1995 | Sama_0093 | KEGG: shm:Shewmr7_2268 ATP dependent DNA ligase. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.926 |
leuS | ligA | Sama_2582 | Sama_1516 | KEGG: son:SO1174 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.876 |
leuS | polA | Sama_2582 | Sama_0093 | KEGG: son:SO1174 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.583 |
leuS | topA | Sama_2582 | Sama_1322 | KEGG: son:SO1174 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.940 |
ligA | Sama_0041 | Sama_1516 | Sama_0041 | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.824 |
ligA | Sama_0419 | Sama_1516 | Sama_0419 | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | KEGG: son:SO0467 DNA helicase II. | 0.660 |
ligA | Sama_1995 | Sama_1516 | Sama_1995 | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | KEGG: shm:Shewmr7_2268 ATP dependent DNA ligase. | 0.934 |
ligA | leuS | Sama_1516 | Sama_2582 | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | KEGG: son:SO1174 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.876 |
ligA | polA | Sama_1516 | Sama_0093 | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.640 |