STRINGSTRING
alr alr Rfer_4054 Rfer_4054 ddl ddl murF murF Rfer_1037 Rfer_1037 Rfer_1546 Rfer_1546 Rfer_1911 Rfer_1911 Rfer_0976 Rfer_0976 Rfer_0489 Rfer_0489 murD murD mpl mpl
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (374 aa)    
Predicted Functional Partners:
Rfer_4054
L-alanine dehydrogenase; Belongs to the AlaDH/PNT family.
  
 
 0.976
ddl
D-alanine--D-alanine ligase; Cell wall formation.
 
 
 0.953
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.947
Rfer_1037
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase.
    
 0.915
Rfer_1546
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase.
    
 0.915
Rfer_1911
Aminotransferase.
    
 0.826
Rfer_0976
Ornithine cyclodeaminase.
     
 0.818
Rfer_0489
HD-GYP domain-like.
       0.782
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
 
 
 0.700
mpl
UDP-N-acetylmuramate; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
 
   
 0.657
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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