STRINGSTRING
alaS alaS ABS52074.1 ABS52074.1 ABS52378.1 ABS52378.1 metG metG pheT pheT valS valS ABS51531.1 ABS51531.1 ABS51077.1 ABS51077.1 ABS52516.1 ABS52516.1 ABS51333.1 ABS51333.1 ABS52381.1 ABS52381.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
alaSalanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (845 aa)    
Predicted Functional Partners:
ABS52074.1
Putative TPR Domain containing protein; Identified by match to protein family HMM PF07719.
   
 0.928
ABS52378.1
Conserved hypothetical protein.
   
 0.917
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.861
pheT
phenylalanyl-tRNA synthetase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
 
 0.849
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
 
  
 0.841
ABS51531.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02545; Belongs to the Maf family.
  
    0.792
ABS51077.1
Conserved hypothetical protein.
       0.791
ABS52516.1
Hypothetical protein; Identified by glimmer; putative.
  
 0.784
ABS51333.1
Conserved hypothetical protein.
   
 0.783
ABS52381.1
Putative periplasmic protein.
   
 0.783
Your Current Organism:
Campylobacter hominis
NCBI taxonomy Id: 360107
Other names: C. hominis ATCC BAA-381, Campylobacter hominis ATCC BAA-381, Campylobacter hominis str. ATCC BAA-381, Campylobacter hominis strain ATCC BAA-381
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