STRINGSTRING
Smal_0716 Smal_0716 Smal_0717 Smal_0717 Smal_0714 Smal_0714 Smal_0324 Smal_0324 Smal_0715 Smal_0715 Smal_0713 Smal_0713
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_0716PFAM: ribonuclease BN; KEGG: xom:XOO_3417 ribonuclease BN/unknown domain fusion protein. (424 aa)    
Predicted Functional Partners:
Smal_0717
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: xcb:XC_3369 thioredoxin.
 
     0.834
Smal_0714
KEGG: xcb:XC_3372 hypothetical protein.
  
    0.643
Smal_0324
PFAM: ribonuclease BN; KEGG: xcv:XCV3993 putative ribonuclease BN.
  
     0.630
Smal_0715
TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: xom:XOO_3418 tryptophan repressor binding protein; Belongs to the WrbA family.
       0.628
Smal_0713
Asparaginase; KEGG: xcv:XCV0963 asparaginase.
       0.464
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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