STRINGSTRING
rpmE2 rpmE2 rpsP rpsP rplU rplU rpsT rpsT rplS rplS rpsO rpsO rpmB rpmB rpmF rpmF rpmA rpmA rpmJ rpmJ rplT rplT
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmE2PFAM: ribosomal protein L31; KEGG: xcb:XC_0945 50S ribosomal protein L31 type B. (80 aa)    
Predicted Functional Partners:
rpsP
PFAM: ribosomal protein S16; KEGG: xcb:XC_3043 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.996
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.995
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.995
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.995
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.995
rpmB
PFAM: ribosomal protein L28; KEGG: xom:XOO_4295 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
 
 
 0.995
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: xom:XOO_0802 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.993
rpmA
PFAM: ribosomal protein L27; KEGG: xom:XOO_1507 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.993
rpmJ
PFAM: ribosomal protein L36; KEGG: xom:XOO_2048 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.993
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.993
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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