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rsmG rsmG Sare_5107 Sare_5107 Sare_5105 Sare_5105 rnpA rnpA Sare_5104 Sare_5104 Sare_5108 Sare_5108 frr frr rsmA rsmA rpoB rpoB Sare_1902 Sare_1902 rpsL rpsL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rsmGMethyltransferase GidB; Specifically methylates the N7 position of guanine in position 518 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (242 aa)    
Predicted Functional Partners:
Sare_5107
PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: stp:Strop_4589 single-stranded nucleic acid binding R3H domain protein.
  
  
 0.960
Sare_5105
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: stp:Strop_4587 cobyrinic acid a,c-diamide synthase.
  
  
 0.835
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
  
 0.832
Sare_5104
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: stp:Strop_4586 ParB-like partition protein; Belongs to the ParB family.
  
  
 0.830
Sare_5108
PFAM: 60 kDa inner membrane insertion protein; KEGG: stp:Strop_4590 60 kDa inner membrane insertion protein.
  
  
 0.779
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
  
   
 0.724
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
     
 0.695
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.693
Sare_1902
TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: stp:Strop_1911 hemolysin A.
  
   
 0.682
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
      
 0.673
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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