STRINGSTRING
xylA xylA xylB xylB ACD17645.1 ACD17645.1 ACD17623.1 ACD17623.1 ACD14848.1 ACD14848.1 ACD17629.1 ACD17629.1 ACD17798.1 ACD17798.1 ACD20930.1 ACD20930.1 glk glk ACD20933.1 ACD20933.1 ACD20932.1 ACD20932.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAKEGG: bxe:Bxe_B2622 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family. (440 aa)    
Predicted Functional Partners:
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: bxe:Bxe_A0729 xylulokinase.
 
 
 0.987
ACD17645.1
PFAM: carbohydrate kinase FGGY; KEGG: bxe:Bxe_A0712 putative sugar kinase protein.
 
 
 0.983
ACD17623.1
Xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: bcm:Bcenmc03_5467 xylulokinase; Belongs to the FGGY kinase family.
 
 
 0.974
ACD14848.1
PFAM: PfkB domain protein; KEGG: bxe:Bxe_A4286 putative carbohydrate kinase.
    
 0.917
ACD17629.1
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: bxe:Bxe_A0730 putative D-arabinitol 4-dehydrogenase.
    
 0.916
ACD17798.1
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A0549 putative short-chain dehydrogenase/reductase, FabG-like.
     
 0.902
ACD20930.1
KEGG: bxe:Bxe_B2621 ABC xylose transporter, periplasmic ligand binding protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator.
 
  
 0.861
glk
Glucokinase; KEGG: bxe:Bxe_A3454 glucokinase; TIGRFAM: glucokinase; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); Glucokinase; Belongs to the bacterial glucokinase family.
     
 0.840
ACD20933.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
   
 0.826
ACD20932.1
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_B2623 transcriptional regulator, AraC family.
 
   
 0.820
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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