STRINGSTRING
recO recO era era recR recR polA polA rnc rnc Dshi_1016 Dshi_1016 lepB lepB recF recF Dshi_0202 Dshi_0202 addA addA Dshi_0741 Dshi_0741
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (241 aa)    
Predicted Functional Partners:
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
 
  
 0.959
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
 
 0.883
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
   
 0.857
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
  
 0.821
Dshi_1016
PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
  
    0.812
lepB
KEGG: rsq:Rsph17025_2572 signal peptidase I TIGRFAM: signal peptidase I PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.
 
    0.805
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
  
 
 0.796
Dshi_0202
PFAM: protein of unknown function DUF1491 KEGG: sil:SPO0690 hypothetical protein.
 
    0.792
addA
TIGRFAM: Double-strand break repair helicase AddA PFAM: UvrD/REP helicase KEGG: rsp:RSP_1527 helicase, UvrD/Rep family PMID: 15547262; Belongs to the helicase family. UvrD subfamily.
 
  
 0.787
Dshi_0741
Chromosomal replication initiator; Weak evidence for predicted function; DnaA.
  
  
 0.782
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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