Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GFO_0643 | GFO_1844 | GFO_0643 | GFO_1844 | Secreted or periplasmic 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | Phosphoribosyltransferase. | 0.900 |
GFO_0643 | GFO_2406 | GFO_0643 | GFO_2406 | Secreted or periplasmic 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | Phosphoribosyltransferase. | 0.900 |
GFO_0643 | pyrF | GFO_0643 | GFO_0478 | Secreted or periplasmic 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.900 |
GFO_0643 | pyrH | GFO_0643 | GFO_0100 | Secreted or periplasmic 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.900 |
GFO_0643 | surE | GFO_0643 | GFO_2964 | Secreted or periplasmic 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | 5'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.907 |
GFO_0643 | udk | GFO_0643 | GFO_0812 | Secreted or periplasmic 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | Uridine kinase. | 0.915 |
GFO_0643 | upp | GFO_0643 | GFO_1565 | Secreted or periplasmic 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | Uracil phosphoribosyltransferase. | 0.900 |
GFO_1844 | GFO_0643 | GFO_1844 | GFO_0643 | Phosphoribosyltransferase. | Secreted or periplasmic 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | 0.900 |
GFO_1844 | GFO_2406 | GFO_1844 | GFO_2406 | Phosphoribosyltransferase. | Phosphoribosyltransferase. | 0.927 |
GFO_1844 | pyrB | GFO_1844 | GFO_1843 | Phosphoribosyltransferase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.990 |
GFO_1844 | pyrD | GFO_1844 | GFO_2519 | Phosphoribosyltransferase. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.610 |
GFO_1844 | pyrE | GFO_1844 | GFO_2690 | Phosphoribosyltransferase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.683 |
GFO_1844 | pyrF | GFO_1844 | GFO_0478 | Phosphoribosyltransferase. | Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.966 |
GFO_1844 | pyrH | GFO_1844 | GFO_0100 | Phosphoribosyltransferase. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.911 |
GFO_1844 | surE | GFO_1844 | GFO_2964 | Phosphoribosyltransferase. | 5'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.911 |
GFO_1844 | udk | GFO_1844 | GFO_0812 | Phosphoribosyltransferase. | Uridine kinase. | 0.911 |
GFO_1844 | upp | GFO_1844 | GFO_1565 | Phosphoribosyltransferase. | Uracil phosphoribosyltransferase. | 0.911 |
GFO_2406 | GFO_0643 | GFO_2406 | GFO_0643 | Phosphoribosyltransferase. | Secreted or periplasmic 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | 0.900 |
GFO_2406 | GFO_1844 | GFO_2406 | GFO_1844 | Phosphoribosyltransferase. | Phosphoribosyltransferase. | 0.927 |
GFO_2406 | pyrB | GFO_2406 | GFO_1843 | Phosphoribosyltransferase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.947 |
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