STRINGSTRING
Ssed_4252 Ssed_4252 Ssed_4251 Ssed_4251 Ssed_4171 Ssed_4171 Ssed_0177 Ssed_0177 gmhA gmhA Ssed_0037 Ssed_0037 rsmI rsmI Ssed_4254 Ssed_4254 Ssed_0046 Ssed_0046 Ssed_3059 Ssed_3059 Ssed_2053 Ssed_2053
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_4252KEGG: slo:Shew_0226 protein of unknown function UPF0102; Belongs to the UPF0102 family. (117 aa)    
Predicted Functional Partners:
Ssed_4251
KEGG: slo:Shew_0227 LppC family lipoprotein.
     
 0.821
Ssed_4171
KEGG: slo:Shew_0283 Mg chelatase, subunit ChlI.
 
  
 0.758
Ssed_0177
KEGG: shw:Sputw3181_0113 competence protein ComF.
 
    0.743
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
  
 0.726
Ssed_0037
KEGG: slo:Shew_3734 DNA protecting protein DprA.
 
    0.605
rsmI
uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.602
Ssed_4254
KEGG: slo:Shew_0224 transport-associated.
     
 0.506
Ssed_0046
KEGG: slo:Shew_3724 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
   
    0.475
Ssed_3059
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
   
    0.453
Ssed_2053
KEGG: saz:Sama_1821 putative diguanylate phosphodiesterase.
  
    0.439
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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