node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GM21_2982 | rplD | GM21_2982 | GM21_3327 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gbm:Gbem_1301 protein of unknown function DUF448. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.997 |
GM21_2982 | rpsB | GM21_2982 | GM21_1485 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gbm:Gbem_1301 protein of unknown function DUF448. | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: gbm:Gbem_2756 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.997 |
GM21_2982 | rpsC | GM21_2982 | GM21_3322 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gbm:Gbem_1301 protein of unknown function DUF448. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.997 |
GM21_2982 | rpsD | GM21_2982 | GM21_3302 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gbm:Gbem_1301 protein of unknown function DUF448. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.994 |
GM21_2982 | rpsF | GM21_2982 | GM21_1476 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gbm:Gbem_1301 protein of unknown function DUF448. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.550 |
GM21_2982 | rpsG | GM21_2982 | GM21_3332 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gbm:Gbem_1301 protein of unknown function DUF448. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.997 |
GM21_2982 | rpsL | GM21_2982 | GM21_3333 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gbm:Gbem_1301 protein of unknown function DUF448. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.997 |
GM21_2982 | rpsM | GM21_2982 | GM21_3304 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gbm:Gbem_1301 protein of unknown function DUF448. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.997 |
GM21_2982 | rpsS | GM21_2982 | GM21_3324 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gbm:Gbem_1301 protein of unknown function DUF448. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.997 |
rplD | GM21_2982 | GM21_3327 | GM21_2982 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gbm:Gbem_1301 protein of unknown function DUF448. | 0.997 |
rplD | rpsB | GM21_3327 | GM21_1485 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: gbm:Gbem_2756 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.998 |
rplD | rpsC | GM21_3327 | GM21_3322 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplD | rpsD | GM21_3327 | GM21_3302 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.998 |
rplD | rpsF | GM21_3327 | GM21_1476 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.984 |
rplD | rpsG | GM21_3327 | GM21_3332 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
rplD | rpsI | GM21_3327 | GM21_3348 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | PFAM: ribosomal protein S9; KEGG: gbm:Gbem_0913 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.990 |
rplD | rpsL | GM21_3327 | GM21_3333 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.998 |
rplD | rpsM | GM21_3327 | GM21_3304 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.998 |
rplD | rpsS | GM21_3327 | GM21_3324 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
rpsB | GM21_2982 | GM21_1485 | GM21_2982 | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: gbm:Gbem_2756 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gbm:Gbem_1301 protein of unknown function DUF448. | 0.997 |