Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PHZ_c2262 | bfr | PHZ_c2262 | PHZ_c3196 | Heme oxygenase. | Bacterioferritin (cytochrome b1); Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | 0.904 |
| PHZ_c2262 | ctaB | PHZ_c2262 | PHZ_c0544 | Heme oxygenase. | Protoheme IX farnesyl transferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.900 |
| PHZ_c2262 | hemH | PHZ_c2262 | PHZ_c3533 | Heme oxygenase. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.900 |
| PHZ_c2297 | PHZ_c3532 | PHZ_c2297 | PHZ_c3532 | Protoporphyrinogen oxidase. | Conserved predicted membrane protein. | 0.900 |
| PHZ_c2297 | hemH | PHZ_c2297 | PHZ_c3533 | Protoporphyrinogen oxidase. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.925 |
| PHZ_c3532 | PHZ_c2297 | PHZ_c3532 | PHZ_c2297 | Conserved predicted membrane protein. | Protoporphyrinogen oxidase. | 0.900 |
| PHZ_c3532 | hemE | PHZ_c3532 | PHZ_c3534 | Conserved predicted membrane protein. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.896 |
| PHZ_c3532 | hemH | PHZ_c3532 | PHZ_c3533 | Conserved predicted membrane protein. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.988 |
| PHZ_c3532 | rho | PHZ_c3532 | PHZ_c3531 | Conserved predicted membrane protein. | Probable transcription termination factor RHO protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.475 |
| bfr | PHZ_c2262 | PHZ_c3196 | PHZ_c2262 | Bacterioferritin (cytochrome b1); Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | Heme oxygenase. | 0.904 |
| bfr | hemH | PHZ_c3196 | PHZ_c3533 | Bacterioferritin (cytochrome b1); Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.926 |
| ctaB | PHZ_c2262 | PHZ_c0544 | PHZ_c2262 | Protoheme IX farnesyl transferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | Heme oxygenase. | 0.900 |
| ctaB | hemE | PHZ_c0544 | PHZ_c3534 | Protoheme IX farnesyl transferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.407 |
| ctaB | hemH | PHZ_c0544 | PHZ_c3533 | Protoheme IX farnesyl transferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.930 |
| ctaB | ysG | PHZ_c0544 | PHZ_c0287 | Protoheme IX farnesyl transferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | Siroheme synthase. | 0.418 |
| hemB | hemC | PHZ_c1682 | PHZ_c3405 | Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.996 |
| hemB | hemE | PHZ_c1682 | PHZ_c3534 | Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.837 |
| hemB | hemH | PHZ_c1682 | PHZ_c3533 | Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.512 |
| hemB | ysG | PHZ_c1682 | PHZ_c0287 | Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | Siroheme synthase. | 0.737 |
| hemC | hemB | PHZ_c3405 | PHZ_c1682 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.996 |
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