rpsJ protein (Variovorax paradoxus S110) - STRING interaction network

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rpsJ

Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (104 aa)

Predicted Functional Partners:

rpsC

0.999

rpsS

0.999

rpsG

0.999

rpsE

0.999

rpsB

0.998

rpsI

0.998

rpsQ

0.998

rplD

0.998

rpsL

0.998

rpsD

0.998

Your Current Organism:

Variovorax paradoxus S110

NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplD	rpsB	Vapar_4912	Vapar_2599	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.998
rplD	rpsC	Vapar_4912	Vapar_4907	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplD	rpsD	Vapar_4912	Vapar_5046	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.998
rplD	rpsE	Vapar_4912	Vapar_5053	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.998
rplD	rpsG	Vapar_4912	Vapar_4919	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.998
rplD	rpsI	Vapar_4912	Vapar_4677	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	PFAM: ribosomal protein S9; KEGG: dac:Daci_5913 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.990
rplD	rpsJ	Vapar_4912	Vapar_4916	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.998
rplD	rpsL	Vapar_4912	Vapar_4920	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.998
rplD	rpsQ	Vapar_4912	Vapar_4904	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999
rplD	rpsS	Vapar_4912	Vapar_4909	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
rpsB	rplD	Vapar_2599	Vapar_4912	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.998
rpsB	rpsC	Vapar_2599	Vapar_4907	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.998
rpsB	rpsD	Vapar_2599	Vapar_5046	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
rpsB	rpsE	Vapar_2599	Vapar_5053	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.998
rpsB	rpsG	Vapar_2599	Vapar_4919	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rpsB	rpsI	Vapar_2599	Vapar_4677	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	PFAM: ribosomal protein S9; KEGG: dac:Daci_5913 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.998
rpsB	rpsJ	Vapar_2599	Vapar_4916	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.998
rpsB	rpsL	Vapar_2599	Vapar_4920	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.999
rpsB	rpsQ	Vapar_2599	Vapar_4904	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.998
rpsB	rpsS	Vapar_2599	Vapar_4909	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.998

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