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STRINGSTRING
slr1619 slr1619 SYNGTS_0327 SYNGTS_0327 slr1610 slr1610 rfbG rfbG slr0980 slr0980 rfbF rfbF sll0574 sll0574 slr0978 slr0978 slr0977 slr0977 slr0981 slr0981 SYNGTS_0324 SYNGTS_0324
"slr1610" - Hypothetical protein in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr1610Hypothetical protein (433 aa)    
Predicted Functional Partners:
SYNGTS_0324
ABC transporter (430 aa)
         
  0.951
SYNGTS_0327
dTDP-6-deoxy-L-mannose-dehydrogenase (189 aa)
 
     
  0.946
rfbF
alpha-D-glucose-1-phosphatecytidylyltransferase (256 aa)
 
     
  0.901
rfbG
CDP-glucose-4,6-dehydratase (360 aa)
         
  0.893
slr0980
Hypothetical protein (143 aa)
         
  0.886
slr1619
Hypothetical protein (249 aa)
 
          0.883
slr0978
Hypothetical protein (135 aa)
         
  0.867
slr0981
Hypothetical protein (187 aa)
         
  0.847
sll0574
Probable lipopolysaccharide ABC transporter permease protein (271 aa)
         
  0.831
slr0977
ABC transporter (276 aa)
         
  0.802
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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