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STRINGSTRING
slr1066 slr1066 SYNGTS_2253 SYNGTS_2253 SYNGTS_1536 SYNGTS_1536 slr1084 slr1084 slr0583 slr0583 SYNGTS_0343 SYNGTS_0343 slr1299 slr1299 fcl fcl SYNGTS_0356 SYNGTS_0356 sll1971 sll1971 sqdB sqdB
"SYNGTS_0343" - UDP-glucose-4-epimerase in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNGTS_0343UDP-glucose-4-epimerase (340 aa)    
Predicted Functional Partners:
slr1299
UDP-glucose dehydrogenase (453 aa)
   
 
  0.982
slr1066
Hypothetical protein (401 aa)
   
   
  0.907
sqdB
Sulfolipid biosynthesis protein SqdB (383 aa)
         
    0.900
sll1971
Hypothetical protein (404 aa)
   
   
  0.870
SYNGTS_0356
UDP-glucose-4-epimerase (105 aa)
 
   
 
0.853
slr0583
Hypothetical protein (310 aa)
   
  0.849
fcl
Hypothetical protein; Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction (312 aa)
   
  0.849
slr1084
Hypothetical protein (146 aa)
         
  0.847
SYNGTS_1536
dTDP-glucose 4-6-dehydratase (309 aa)
   
0.822
SYNGTS_2253
Glucose-1-phosphate thymidylyltransferase (365 aa)
     
  0.818
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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