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STRINGSTRING
mdh mdh frdA frdA nifJ nifJ lpdA lpdA SYNGTS_2571 SYNGTS_2571 gltA gltA hdrB hdrB sucC sucC SYNGTS_1195 SYNGTS_1195 odhB odhB sucD sucD
"sucC" - succinate--CoA ligase in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sucCsuccinate--CoA ligase (401 aa)    
Predicted Functional Partners:
sucD
succinyl-CoA synthetase (302 aa)
  0.999
SYNGTS_1195
Succinate dehydrogenase iron-sulphur protein subunit (331 aa)
 
  0.998
frdA
Succinate dehydrogenase flavoprotein subunit (575 aa)
 
  0.998
SYNGTS_2571
Succinate dehydrogenase iron-sulfur protein (245 aa)
 
  0.998
odhB
Dihydrolipoamide acetyltransferase component(E2) of pyruvate dehydrogenase complex (433 aa)
   
  0.987
nifJ
Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1199 aa)
   
 
  0.976
hdrB
Heterodisulfide reductase subunit B (301 aa)
 
 
  0.973
mdh
2-ketoacid dehydrogenase using malate or lactate as substrate; Catalyzes the reversible oxidation of malate to oxaloacetate (324 aa)
   
  0.962
lpdA
Dihydrolipoamide dehydrogenase; Lipoamide dehydrogenase is a component of the alpha- ketoacid dehydrogenase complexes (478 aa)
 
  0.943
gltA
Citrate synthase (397 aa)
   
  0.910
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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