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STRINGSTRING
SYNGTS_2566 SYNGTS_2566 rnz rnz rne rne rnd rnd SYNGTS_0033 SYNGTS_0033 sll1290 sll1290 SYNGTS_1584 SYNGTS_1584 SYNGTS_0032 SYNGTS_0032 sll1202 sll1202 pgsA pgsA SYNGTS_0015 SYNGTS_0015
"sll1290" - Ribonuclease II in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll1290Ribonuclease II (666 aa)    
Predicted Functional Partners:
rnd
Ribonuclease D (217 aa)
   
  0.997
rne
Ribonuclease E (674 aa)
     
  0.981
SYNGTS_1584
polyA polymerase (942 aa)
   
  0.913
pgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (179 aa)
       
 
  0.898
rnz
Hypothetical protein; Zinc phosphodiesterase, which displays some tRNA 3’- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3’-trailer from precursor tRNA (326 aa)
     
  0.844
SYNGTS_2566
polyA polymerase (416 aa)
   
  0.827
SYNGTS_0033
iron(III) dicitrate-binding periplasmic protein (311 aa)
     
      0.814
SYNGTS_0032
iron(III) dicitrate-binding periplasmic protein (330 aa)
     
      0.814
sll1202
Hypothetical protein (347 aa)
     
      0.814
SYNGTS_0015
iron(III) dicitrate transport system permeaseprotein (315 aa)
     
      0.814
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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