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STRINGSTRING
sll0789 sll0789 slr0222 slr0222 sigC sigC ssl0453 ssl0453 cpcA cpcA htpG htpG ssl0452 ssl0452 sodB sodB slr0270 slr0270 sll0396 sll0396 slr0271 slr0271
"ssl0452" - Phycobilisome degradation protein NblA in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssl0452Phycobilisome degradation protein NblA (62 aa)    
Predicted Functional Partners:
ssl0453
Phycobilisome degradation protein NblA (60 aa)
     
 
  0.968
slr0271
Hypothetical protein (172 aa)
           
  0.712
slr0270
Hypothetical protein (106 aa)
           
  0.712
sll0396
OmpR subfamily protein Rre28 (224 aa)
           
  0.627
slr0222
Hybrid sensory kinase Hik25/GidA (1178 aa)
           
  0.539
sigC
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (404 aa)
           
  0.536
htpG
Heat shock protein; Molecular chaperone. Has ATPase activity (658 aa)
           
  0.521
sll0789
OmpR subfamily protein Rre34/CopR (232 aa)
           
  0.521
sodB
Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems (199 aa)
           
  0.521
cpcA
Phycocyanin a subunit; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex (162 aa)
           
  0.521
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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