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STRINGSTRING
ppc ppc mdh mdh sll1499 sll1499 gltB gltB dapF dapF SYNGTS_2833 SYNGTS_2833 lysC lysC dapB dapB tyrA tyrA hom hom pheA pheA
"SYNGTS_2833" - Aspartate aminotransferase in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
SYNGTS_2833Aspartate aminotransferase (389 aa)    
Predicted Functional Partners:
lysC
Aspartate kinase (600 aa)
   
  0.981
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle (1034 aa)
         
  0.978
sll1499
Ferredoxin-dependent glutamate synthase (1556 aa)
   
  0.954
gltB
Ferredoxin-dependent glutamate synthase (1550 aa)
   
  0.954
hom
Homoserine dehydrogenase (433 aa)
   
  0.886
tyrA
Prephenate dehydrogenase (279 aa)
       
  0.833
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (279 aa)
       
  0.821
mdh
2-ketoacid dehydrogenase using malate or lactate as substrate; Catalyzes the reversible oxidation of malate to oxaloacetate (324 aa)
   
 
  0.805
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate (275 aa)
   
 
  0.802
pheA
Chorismate mutase/prephenate dehydratase (297 aa)
 
 
  0.802
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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